An open access database ready to answer your sweetest queries

For the delopment of database:

  1. RCSB PDB:

    H.M. Berman, J. Westbrook, Z. Feng, G. Gilliland, T.N. Bhat, H. Weissig, I.N. Shindyalov, P.E. Bourne.
    (2000) The Protein Data Bank Nucleic Acids Research, 28: 235-242.

    Peter W. Rose, Andreas Prlić, Ali Altunkaya, Chunxiao Bi, Anthony R. Bradley, Cole H. Christie, Luigi Di Costanzo, Jose M. Duarte, Shuchismita Dutta, Zukang Feng, Rachel Kramer Green, David S. Goodsell, Brian Hudson, Tara Kalro, Robert Lowe, Ezra Peisach, Christopher Randle, Alexander S. Rose, Chenghua Shao, Yi-Ping Tao, Yana Valasatava, Maria Voigt, John D. Westbrook, Jesse Woo, Huangwang Yang, Jasmine Y. Young, Christine Zardecki, Helen M. Berman, Stephen K. Burley.
    (2017) The RCSB protein data bank: integrative view of protein, gene and 3D structural information Nucleic Acids Research, 45: D271-D281.


  2. pdb-care web-service

    Lütteke T1, Frank M, von der Lieth CW.
    (2004)Data mining the protein data bank: automatic detection and assignment of carbohydrate structures Carbohydr Res. 2;339(5):1015-20.
    Lütteke T1, von der Lieth CW.
    (2004)pdb-care (PDB carbohydrate residue check): a program to support annotation of complex carbohydrate structures in PDB files BMC Bioinformatics 4;5:69..

  3. PDBbind Database

    Liu, Zhihai; Su, Minyi; Han, Li; Liu, Jie; Yang, Qifan; Li, Yan; Wang, Renxiao.
    (2017) Forging the Basis for Developing Protein-Ligand Interaction Scoring Functions Accounts of Chemical Research,50 (2): pp. 302-309


  4. MOAD Database

    L Hu, ML Benson, RD Smith, MG Lerner, HA Carlson.
    (2015) Binding MOAD (Mother Of All Databases) Proteins60, 333-40

    A. Ahmed, RD Smith, JJ Clark, JB Dunbar, HA Carlson.
    (2014) Recent improvements to Binding MOAD: a resource for proteinligand binding affinities and structures Nucl. Acids Res.43, D465-D469.


  5. BindingDB Database

    Gilson,M.K., Liu,T., Baitaluk,M., Nicola,G., Hwang,L., and Chong,J.
    (2016) BindingDB in 2015: A public database for medicinal chemistry, computational chemistry and systems pharmacology Nucleic Acids Research 44:D1045-D1063

    Liu,T., Lin,Y., Wen,X., Jorrisen,R.N. and Gilson,M.K.
    (2007) BindingDB: a web-accessible database of experimentally determined protein-ligand binding affinities Nucleic Acids Research 35:D198-D201


  6. Afin Db Database

    Block P, Sotriffer CA, Dramburg I, Klebe G. (2006)AffinDB: a freely accessible database of affinities for protein-ligand complexes from the PDB, Nucleic Acids Res. 1;34(Database issue):D522-6.

For the delopment of website:

  1. NGL

    AS Rose, AR Bradley, Y Valasatava, JM Duarte, A Prlić and PW Rose.
    (2016) Web-based molecular graphics for large complexes. ACM Proceedings of the 21st International Conference on Web3D Technology Web3D '16 185-186

    AS Rose and PW Hildebrand.
    (2015) NGL Viewer: a web application for molecular visualization. Nucl Acids Res 43 (W1): W576-W579


  2. Other online resources